Future Directions

• Parallelize translate
• Improve performance of merge
• Add weave command to combine translate, merge, summarize
• Extend expand to parse SnpEff/Annovar annotated results
• Extend expand to generate formatted results
• Improve command validation (check source tags, check “shape” of inputs)
• Enable 4.2/4.3 VCF support
• Add support for new somatic callers
• Add support for Germline workflows
• Add support for Galaxy integration
• Add gene-level rollup for annotated data