Installing Jaquard

Jacquard has been tested with Python 2.7 and 3.4 on Windows7, OSX, and *nix.

Prerequisites

Note

Pip installs all required libraries; see [Installing] below.

• natsort (3.5.2)
• nosetests, testfixtures (3.0.2), and numpy (>=1.7.1) are required for running automated tests

Installing

The easiest way to install Jacquard is through PyPI. Get pip if it’s not available in your system:

$ pip install jacquard

You can install from source from github:

$ pip install git+https://github.com/umich-brcf-bioinf/Jacquard

If you don’t have root permissions, you can install locally:

$ pip install --user jacquard

Note

You may need to modify your path to include the Python install dir (e.g. /Users/<username>/.local/bin)