References¶
[r1] | Cibulskis K et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat Biotechnol 2013, 31:213-219. |
[r2] | Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, et al. The variant call format and VCFtools. Bioinformatics 2011; 27: 2156–8. |
[r3] | Kim SY, Speed TP. Comparing somatic mutation-callers: beyond Venn diagrams. BMC Bioinformatics 2013, 14:189. |
[r4] | Koboldt DC et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 2012, 22:568-576. |
[r5] | O’Rawe J et al. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med 2013, 5:28. |
[r6] | Saunders CT et al. Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics 2012, 28:1811–7. |
[r7] | Xu H. et al. Comparison of somatic mutation calling methods in amplicon and whole exome sequence data. BMC Genomics 2014, 15: 244. |